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• The CFTR ΔF508 mutation has minimal effect on the gene expression profile of differentiated human airway epithelia, Am. J. Physiol. Lung Cell Mol Physiol, June 3, 2005.
• Insights into a dinoflagellate genome through expressed sequence tag analysis, BMC Genomics 2005, 6:80.
• Bardet–Biedl syndrome type 4 (BBS4)-null mice implicate Bbs4 in flagella formation but not global cilia assembly, PNAS, vol. 101, no. 23, June 8, 2004.
• Gene transcript clustering: a comparison of parallel approaches, Future Generation Computer Systems, 2005, 21:731-735.
• Isolation and characterization of autotrophic, hydrogen-utilizing, percholarte-reducing bacteria, Applied Microbial and Cell Physiology, 2005, 67: 261-268.
• High-Density Rat Radiation Hybrid Maps Containing Over 24,000 SSLPs, Genes, and ESTs Provide a Direct Link to the Rat Genome Sequence, Genome Research 14:750-757, 2004.
• 1274 Full-Open Reading Frames of Transcripts Expressed in the Developing Mouse Nervous System, Genome Research 14:2053-2063, 2004.
• Missense Varations in the Fibulin 5 Gene and Age-related Macular Degeneration, New England Journal of Medicine, 2004, 351:346-53.
• Gene expression profiling of potential PPARgamma target genes in mouse aorta, Physiol Genomics 18: 33–42, 2004.
• Comparative Genomic Analysis Identifies an ADP-Ribosylation Gene as the Cause of Bardet-Biedl Syndrome (BBS3), American Journal of Human Genetics, 75:475–484, 2004.
• PLET1 (C11 orf34), a highly expressed and processed novel gene in pig and mouse placenta, is transcribed but poorly spliced in human, Genomics, vol. 84, 2004, 114-125.
• Discovery of five conserved Beta-defensin gene clusters using a computational search strategy, PNAS, vol. 99, no. 4, 2002, pp. 2129-2133.
• Parallelization of local BLAST service on workstation clusters, Future Generation Computer Systems, V. 17, 2001, pp. 745-754.
• ESTprep: preprocessing cDNA sequence reads, Bioinformatics, vol. 19, no. 11, 2003, pp. 1318-1324.
• Identifying Candidate Disease Genes with High-Performance Computing, Supercomputing, vol. 26, 2003, pp. 7-24.
• Pooled library tissue tags for EST-based gene discovery, Bioinformatics, vol. 18, no. 9, 2002, pp. 1162-1166.
• Genomics-based approaches to gene discovery in innate immunity, Immunological Reviews, vol. 190, 2002, pp. 137-145.
• Alternative parallelization strategies in EST clustering, PaCT 2003
• Parallel creation of non-redundant gene indices from partial mRNA transcripts, FGCS, vol. 18, 2002, pp. 863-870.
• A parallel/distributed architecture for hierarchically heterogenious web-based cooperative applications, FGCS, vol. 17. 2001, pp. 783-793.
• Automated Construction of High-Density Comparative Maps between Rat, Human, and Mouse, Genome Research, vol. 11, 2001, pp. 1935-1943.
• An analysis of allelic variation in the ABCA4 gene, Investigative Ophthalmology and Visual Sciences, Vol. 42, 2001, pp. 1179-1189.
• GenoMap: A distributed system for unifying genotyping and genetic linkage analysis, Parallel Computing, vol. 24, 1998, pp. 1567-1592.
• Generation of a High-Density Rat EST Map, Genome Research, vol. 11, issue 3, 2001, pp. 497-502.
• An Autosomal Genomic Screen for Autism, AJMG, vol. 88, 1999, pp. 609-615.
• Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences, PNAS, vol. 99, issue 26, 2002, pp. 16899-16903.
• Functional annotation of a full-length mouse cDNA collection, Nature, vol. 409, 2001, pp. 685-690.
• Identification of the gene that, when mutated, causes the human obesity syndrome BBS4, Nature Genetics, vol. 28, 2001, pp. 188-191.
• Anopheles gambiae pilot gene discovery priject: Identification of mosquito innate immunity genes from expressed sequence tags generated from immune-competent cell lines, G. Dimopoulos, et. al., Proceedings of the National Academy of Sciences vol. 97, 2000, pp. 6619-6624.
• Aromatic Di-Alanine repeats (AdAR) are structural motifs characteristic of the soluble N-ethylmaleimide-sensitive factor attachment protein (SNAP) family, F. Bruckert, et. al., Proteins: Structure Function and Genetics, vol. 45, 2001, pp. 40-46.